2.5.11Enzymes & Bioenergetics Basics

Distinguish competitive and non-competitive inhibition

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WHY do we even care?

Enzymes speed up reactions. Inhibitors slow them down — and how a drug or poison slows an enzyme tells us where it binds and how to beat it. If a doctor knows an inhibitor is competitive, they know "more substrate fixes it." If it's non-competitive, "more substrate is useless." That single distinction changes the whole treatment logic. This is the 80/20 core: two binding stories → two kinetic signatures.


WHAT each thing is


HOW the kinetics fall out (derive it, don't memorise it)

Start from Michaelis–Menten. Reaction: E+SESE+PE + S \rightleftharpoons ES \rightarrow E + P

Using steady-state, the rate is: v=Vmax[S]Km+[S]v = \frac{V_{max}[S]}{K_m + [S]}

Why this form? vv rises with [S][S] but plateaus because there are only so many enzyme molecules. When [S]=Km[S]=K_m, plug in: v=VmaxKm/(Km+Km)=Vmax/2v = V_{max}\cdot K_m/(K_m+K_m) = V_{max}/2. ✔ That's why KmK_m is the half-max concentration.

Competitive case — derive the effect

The inhibitor steals free enzyme: E+IEIE + I \rightleftharpoons EI. This removes free EE, so the enzyme appears to bind substrate worse. Define α=1+[I]/Ki\alpha = 1 + [I]/K_i. The math gives: v=Vmax[S]αKm+[S]v = \frac{V_{max}[S]}{\alpha K_m + [S]}

Why this step? The inhibitor only competes when there's free enzyme. Pour in huge [S][S] and substrate wins the race — so vVmaxv \to V_{max} still. But the apparent KmK_m becomes αKm\alpha K_m (bigger → looks like lower affinity).

Vmax unchanged,Km increases\boxed{V_{max}\ \text{unchanged},\qquad K_m\ \text{increases}}

Non-competitive case — derive the effect

The inhibitor binds reversibly to EE and to ESES equally (at a separate site). At any instant a fraction of enzyme is in an inhibitor-bound, non-functional form — but because binding is reversible, this is a dynamic equilibrium, not permanent removal. With α=1+[I]/Ki\alpha' = 1 + [I]/K_i: v=(Vmax/α)[S]Km+[S]v = \frac{(V_{max}/\alpha')[S]}{K_m + [S]}

Why this step? At any moment a fraction of enzyme is held inactive regardless of substrate, so flooding substrate cannot rescue you → VmaxV_{max} drops. But the substrate that does bind binds with the same affinity → KmK_m unchanged.

Vmax decreases,Km unchanged\boxed{V_{max}\ \text{decreases},\qquad K_m\ \text{unchanged}}

Figure — Distinguish competitive and non-competitive inhibition

Worked examples



Recall Feynman: explain to a 12-year-old

Imagine a keyhole (the enzyme) and the right key (substrate). A competitive cheater carries a fake key and jams the keyhole — but if you bring a thousand real keys, one always gets in eventually. A non-competitive cheater instead grabs the door frame and bends it for a while, so even the real key turns badly — but this cheater keeps letting go and grabbing again (reversible), it never breaks the door forever. No number of real keys fixes a bent frame.


Flashcards

Competitive inhibitor binds where?
The active site (same site as substrate).
Non-competitive inhibitor binds where?
A different, allosteric site (reversibly).
Effect of competitive inhibition on VmaxV_{max} and KmK_m?
VmaxV_{max} unchanged, KmK_m increases.
Effect of non-competitive inhibition on VmaxV_{max} and KmK_m?
VmaxV_{max} decreases, KmK_m unchanged.
Which inhibition is reversed by adding more substrate?
Competitive.
Why is competitive VmaxV_{max} unchanged?
Excess substrate out-competes inhibitor, so saturation still reaches full rate.
Why does non-competitive lower VmaxV_{max}?
At any instant a fraction of enzyme is held inactive regardless of substrate; flooding substrate can't rescue it.
Is classic non-competitive inhibition reversible?
Yes — it is reversible binding at an allosteric site (permanent knockout = irreversible inhibition).
On Lineweaver–Burk, competitive lines intersect on which axis?
The y-axis (same 1/Vmax1/V_{max}).
On Lineweaver–Burk, non-competitive lines intersect on which axis?
The x-axis (same 1/Km-1/K_m).
Does a non-competitive inhibitor resemble the substrate?
Not necessarily; it binds elsewhere.
What does low KmK_m indicate?
High substrate affinity.
Heavy metals binding cysteine –SH groups are usually what kind of inhibitor?
Irreversible inhibitors (not pure reversible non-competitive).
Mnemonic for the two effects?
"Com-K, Non-V": Competitive→Kₘ, Non-competitive→Vₘₐₓ.

Connections

  • Michaelis-Menten Kinetics
  • Km and Vmax meaning
  • Lineweaver-Burk Plot
  • Allosteric Regulation
  • Enzyme Active Site & Induced Fit
  • Drug Design and Enzyme Inhibitors
  • Uncompetitive Inhibition
  • Irreversible Inhibition

Concept Map

defines

defines

low Km means

two types

two types

resembles substrate

binds elsewhere

out-competed by more substrate

apparent affinity drops

distorts enzyme shape

substrate binding unaffected

signature of

signature of

Michaelis-Menten kinetics

Vmax max rate

Km half-max conc

high affinity

Enzyme inhibitor

Competitive inhibitor

Non-competitive inhibitor

binds active site

binds allosteric site

Vmax unchanged

Km increases

Vmax decreases

Km unchanged

Hinglish (regional understanding)

Intuition Hinglish mein samjho

Dekho, do tarah ke inhibitors hote hain. Competitive inhibitor substrate jaisa dikhta hai, aur seedha enzyme ke active site par baith jaata hai — matlab substrate aur inhibitor ek hi seat ke liye ladte hain. Yahaan trick yeh hai: agar tum substrate ki quantity bahut badha do, toh substrate jeet jaata hai aur enzyme phir se full speed (Vmax) tak pahunch jaata hai. Bas use half-speed tak pahunchne ke liye zyada substrate chahiye, isliye Km badh jaata hai, par Vmax same rehta hai.

Non-competitive inhibitor ka game alag hai. Yeh active site par nahi, kisi dusri (allosteric) jagah par baithta hai aur enzyme ki shape thodi bigaad deta hai — par yaad rakhna, yeh binding bhi reversible hoti hai, matlab inhibitor lagta hai aur chhodta bhi rehta hai (enzyme permanently destroy nahi hota). Kisi bhi pal par enzyme ka ek hissa inactive rehta hai chahe substrate kitna bhi daal do — isliye Vmax gir jaata hai, par Km same rehta hai. Agar koi cheez enzyme ko hamesha ke liye kharab kar de (jaise Pb²⁺ heavy metal cysteine –SH par), toh woh irreversible inhibitor hota hai, yeh alag category hai.

Yaad rakhne ka simple formula: "Com-K, Non-V" — Competitive Km change karta hai, Non-competitive Vmax change karta hai. Aur ek aur cheez: sirf competitive inhibition ko zyada substrate daal kar reverse kiya ja sakta hai; non-competitive ko nahi. Exam mein graph aaye toh — Lineweaver-Burk plot par lines y-axis par milein toh competitive, x-axis par milein toh non-competitive. Yeh do points 80% questions cover kar dete hain.

Test yourself — Enzymes & Bioenergetics Basics

Connections