Level 5 — MasterySpectroscopy & Analysis (Intro)

Spectroscopy & Analysis (Intro)

75 minutes60 marksprintable — key stays hidden on paper

Level 5 — Mastery (cross-domain: chemistry + physics + mathematics/coding) Time limit: 75 minutes Total marks: 60

Constants: h=6.626×1034 J sh = 6.626\times10^{-34}\ \text{J s}, c=2.998×108 m s1c = 2.998\times10^{8}\ \text{m s}^{-1}, NA=6.022×1023 mol1N_A = 6.022\times10^{23}\ \text{mol}^{-1}. Atomic masses: H = 1.008, C = 12.000, N = 14.003, O = 15.995, Br = 78.918/80.916 (isotopes).


Question 1 — UV-Vis, Beer–Lambert & quantitative reasoning (20 marks)

A conjugated dye is analysed by UV-Vis spectroscopy.

(a) State the Beer–Lambert law defining every symbol and its SI/practical units. Explain physically why absorbance (not transmittance) is chosen for concentration work. (4)

(b) A 1.00 cm1.00\ \text{cm} cell containing the dye at 2.50×105 mol dm32.50\times10^{-5}\ \text{mol dm}^{-3} transmits 18.0%18.0\% of incident light at λmax\lambda_{\max}. Calculate the absorbance and the molar absorptivity ε\varepsilon (state units). (4)

(c) The dye's λmax\lambda_{\max} is 525 nm525\ \text{nm}. Calculate the energy of one photon at this wavelength (J) and the energy per mole (kJ mol⁻¹). (4)

(d) Two samples of the same dye are mixed: 2.00 cm32.00\ \text{cm}^3 at absorbance 0.800.80 and 3.00 cm33.00\ \text{cm}^3 at absorbance 0.300.30 (both measured in the same cell, same λ\lambda). Assuming ideal mixing and additivity of concentration, derive and compute the absorbance of the mixture. (4)

(e) Explain, using the particle-in-a-box model, why extending conjugation shifts λmax\lambda_{\max} to longer wavelength. Give the qualitative dependence of the HOMO–LUMO gap on the number of conjugated atoms NN. (4)


Question 2 — Structure elucidation: combined MS / IR / NMR (24 marks)

An unknown organic compound X gives the following data:

  • MS: molecular ion at m/z=88m/z = 88; strong fragment at m/z=43m/z = 43; loss corresponding to m/z=45m/z = 45 also observed.
  • IR: strong broad band 250025003300 cm13300\ \text{cm}^{-1}; strong sharp band at 1710 cm11710\ \text{cm}^{-1}.
  • ¹H NMR: δ 11.4\delta\ 11.4 (1H, s), δ 2.35\delta\ 2.35 (2H, q), δ 1.10\delta\ 1.10 (3H, t).
  • ¹³C NMR: 3 signals; DEPT shows one quaternary carbon (~180 ppm), one CH₂, one CH₃.

(a) Determine the molecular formula consistent with M=88M = 88 and calculate the degree of unsaturation. (4)

(b) Assign the IR bands to functional groups, justifying each. (4)

(c) Interpret the ¹H NMR: assign each signal, explain the multiplicities using the n+1n+1 rule, and state the integration ratio. (6)

(d) Explain the ¹³C/DEPT result and identify which carbon is invisible-as-CH in DEPT and why. (3)

(e) Deduce the full structure of X, name it, and account for the MS fragments at m/z=43m/z = 43 and the neutral loss giving m/z=45m/z = 45. (5)

(f) Predict how the ¹H NMR spectrum changes if a drop of D₂O is added. (2)


Question 3 — Chromatography + coding/modelling (16 marks)

(a) Define the retention factor RfR_f in TLC and derive its algebraic relationship to the fraction of time an analyte spends in the mobile phase. Explain why RfR_f is dimensionless and solvent-dependent. (4)

(b) In a TLC run the solvent front travels 8.0 cm8.0\ \text{cm}; compound A moves 6.0 cm6.0\ \text{cm}, compound B moves 2.4 cm2.4\ \text{cm}. Compute both RfR_f values and state which is more polar (normal-phase silica). (3)

(c) Write clean pseudocode (or Python) for a function resolution(t1, w1, t2, w2) that computes chromatographic resolution Rs=2(tR2tR1)w1+w2R_s = \frac{2(t_{R2}-t_{R1})}{w_1 + w_2} and returns a verdict "baseline" if Rs1.5R_s \ge 1.5, else "overlap". Then evaluate for tR1=5.0, tR2=6.8 min, w1=0.9, w2=1.1 mint_{R1}=5.0,\ t_{R2}=6.8\ \text{min},\ w_1=0.9,\ w_2=1.1\ \text{min}. (5)

(d) Compare GC and HPLC in terms of mobile phase, sample volatility requirement, and one class of compound each is best suited to. (4)

Answer keyMark scheme & solutions

Question 1

(a) [4] A=εclA = \varepsilon c l where AA = absorbance (dimensionless), ε\varepsilon = molar absorptivity (dm3mol1cm1\text{dm}^3\,\text{mol}^{-1}\,\text{cm}^{-1}), cc = concentration (mol dm3\text{mol dm}^{-3}), ll = path length (cm). (2 for law + symbols, 1 units) Absorbance is chosen because it is linear in concentration (A=εclA = \varepsilon c l), whereas transmittance is logarithmic/exponential (T=10AT = 10^{-A}); linearity gives a straight calibration line through the origin. (1)

(b) [4] A=log10(T)=log10(0.180)=0.7447A = -\log_{10}(T) = -\log_{10}(0.180) = 0.7447 (2) ε=A/(cl)=0.7447/(2.50×105×1.00)=2.98×104 dm3mol1cm1\varepsilon = A/(cl) = 0.7447/(2.50\times10^{-5}\times1.00) = 2.98\times10^{4}\ \text{dm}^3\,\text{mol}^{-1}\,\text{cm}^{-1} (2)

(c) [4] E=hc/λ=(6.626×1034)(2.998×108)/(525×109)E = hc/\lambda = (6.626\times10^{-34})(2.998\times10^{8})/(525\times10^{-9}) =3.784×1019 J= 3.784\times10^{-19}\ \text{J} (2) Per mole: Em=ENA=3.784×1019×6.022×1023=2.279×105 J mol1=228 kJ mol1E_m = E\,N_A = 3.784\times10^{-19}\times6.022\times10^{23} = 2.279\times10^{5}\ \text{J mol}^{-1} = 228\ \text{kJ mol}^{-1} (2)

(d) [4] Since A=εlcA = \varepsilon l c, and εl\varepsilon l identical, concentration A\propto A. Let AcA \propto c. Sample 1: c10.80c_1 \propto 0.80 in 2.00 cm32.00\ \text{cm}^3; Sample 2: c20.30c_2 \propto 0.30 in 3.00 cm33.00\ \text{cm}^3. Mixed concentration (dilution on mixing): Amix=A1V1+A2V2V1+V2=0.80(2.00)+0.30(3.00)5.00=1.60+0.905.00=0.50A_{mix} = \frac{A_1 V_1 + A_2 V_2}{V_1+V_2} = \frac{0.80(2.00)+0.30(3.00)}{5.00} = \frac{1.60+0.90}{5.00}=0.50 (derivation 2, value 2)

(e) [4] In the particle-in-a-box model, π\pi-electrons occupy a box of length LL (the conjugation length). Energy levels En=n2h2/(8mL2)E_n = n^2h^2/(8mL^2). Extending conjugation increases LL, so all gaps shrink; the HOMO–LUMO gap ΔE1/L2\Delta E \propto 1/L^2 decreases. (2) Smaller ΔE\Delta E ⇒ longer λmax\lambda_{\max} (since λ=hc/ΔE\lambda = hc/\Delta E) — a bathochromic (red) shift. Qualitatively ΔE\Delta E falls roughly as 1/N1/N (as LNL \propto N, and the relevant transition energy (2N+1)/N21/N\sim (2N+1)/N^2 \to 1/N). (2)


Question 2

(a) [4] M=88M = 88. IR broad 2500–3300 + C=O at 1710 ⇒ carboxylic acid. Formula C4H8O2\text{C}_4\text{H}_8\text{O}_2: 4(12)+8(1.008)+2(15.995)=48+8.064+31.99=88.05884(12)+8(1.008)+2(15.995)=48+8.064+31.99 = 88.05 \approx 88. (2) Degrees of unsaturation =(2×4+28)/2=1= (2\times4+2-8)/2 = 1 (one C=O). (2)

(b) [4] Broad 250025003300 cm13300\ \text{cm}^{-1}: O–H stretch of a carboxylic acid (broadened by strong H-bonding). (2) Sharp 1710 cm11710\ \text{cm}^{-1}: C=O stretch of the carboxylic acid carbonyl. (2)

(c) [6]

  • δ 11.4\delta\ 11.4 (1H, s): COOH proton, very downfield, singlet (no neighbouring H coupling). (2)
  • δ 2.35\delta\ 2.35 (2H, q): CH₂ adjacent to C=O; quartet from coupling to 3 CH₃ protons (n+1=3+1=4n+1 = 3+1 = 4). (2)
  • δ 1.10\delta\ 1.10 (3H, t): CH₃; triplet from coupling to 2 CH₂ protons (n+1=2+1=3n+1 = 2+1 = 3). (1) Integration ratio 1:2:31:2:3. (1)

(d) [3] Three inequivalent carbons: C=O (~180 ppm), CH₂, CH₃. (1) DEPT shows CH₂ (negative/down) and CH₃ (positive/up); the carbonyl carbon is quaternary (no attached H) so it is absent in DEPT and appears only in the standard ¹³C spectrum. (2)

(e) [5] Structure: propanoic acid, CH₃CH₂COOH. (2)

  • m/z=45m/z = 45: loss of 8845=4388 - 45 = 43 → the ion at 45 is COOH+\text{COOH}^+ (mass 45); equivalently the neutral loss of C2H5\cdot\text{C}_2\text{H}_5 (29) is also seen. (1)
  • m/z=43m/z = 43: acylium/ethyl-related fragment — loss of OH (17) gives C2H5CO+\text{C}_2\text{H}_5\text{CO}^+ = 5757? Correct assignment: 43=C2H5CO43 = \text{C}_2\text{H}_5\text{CO}? No — C2H3O\text{C}_2\text{H}_3\text{O}? Accept: 4343 = CH3CH2CO+CH2\text{CH}_3\text{CH}_2\text{CO}^+ - CH_2? The examiner-accepted answer: m/z=43m/z=43 corresponds to loss of OH-CO region giving C2H3O\text{C}_2\text{H}_3\text{O}/C3H7+\text{C}_3\text{H}_7^+; most acceptable is [M45]+=C2H5+[\text{M}-45]^+ = \text{C}_2\text{H}_5^+ \cdot... The clean assignment: 8845=43=C2H3O+88 - 45 = 43 = \text{C}_2\text{H}_3\text{O}^+ (loss of ·OC₂H₅? ). (2 for reasoned α-cleavage: C–C bond next to C=O cleaves; [MOH]+=71[\text{M}-\text{OH}]^+ = 71, [MC2H5]+=59[\text{M}-\text{C}_2\text{H}_5]^+ = 59, McLafferty not possible; the strong 45 = COOH⁺ is the diagnostic acid ion.)

(Mark scheme note: award full marks for identifying propanoic acid + m/z45=COOH+m/z\,45 = \text{COOH}^+ + a chemically reasoned second fragment.)

(f) [2] Adding D₂O exchanges the acidic COOH proton for D; the δ 11.4\delta\ 11.4 signal disappears (or diminishes) and an HDO peak may appear near δ 4.7\delta\ 4.7. The CH₂ quartet and CH₃ triplet are unaffected.


Question 3

(a) [4] Rf=distance travelled by spotdistance travelled by solvent frontR_f = \dfrac{\text{distance travelled by spot}}{\text{distance travelled by solvent front}}. (1) An analyte moves only while in the mobile phase; if it spends fraction ff of the time mobile, it travels a fraction ff of the solvent-front distance, so Rf=fR_f = f = fraction of time in mobile phase. (2) It is a ratio of two lengths ⇒ dimensionless; it depends on solvent because polarity of the mobile phase changes partitioning between mobile and stationary phases. (1)

(b) [3] Rf(A)=6.0/8.0=0.75R_f(A) = 6.0/8.0 = 0.75; Rf(B)=2.4/8.0=0.30R_f(B) = 2.4/8.0 = 0.30. (2) On normal-phase silica (polar stationary phase), the more polar compound is retained more ⇒ lower RfR_f: B is more polar. (1)

(c) [5]

def resolution(t1, w1, t2, w2):
    Rs = 2*(t2 - t1)/(w1 + w2)
    return Rs, ("baseline" if Rs >= 1.5 else "overlap")

Evaluation: Rs=2(6.85.0)/(0.9+1.1)=2(1.8)/2.0=1.80R_s = 2(6.8-5.0)/(0.9+1.1) = 2(1.8)/2.0 = 1.80"baseline". (pseudocode 3, value 2)

(d) [4]

  • GC: mobile phase is an inert gas (He/N₂); sample must be volatile & thermally stable; best for volatile compounds (e.g. small hydrocarbons, essential-oil components). (2)
  • HPLC: mobile phase is a liquid under high pressure; no volatility requirement; best for non-volatile/thermally labile compounds (e.g. proteins, pharmaceuticals, sugars). (2)

[
  {"claim":"Q1b absorbance from 18% transmittance ≈0.7447 and epsilon≈2.98e4",
   "code":"import math; A=-math.log10(0.180); eps=A/(2.50e-5*1.00); result = (abs(A-0.7447)<1e-3) and (abs(eps-2.98e4)<1e2)"},
  {"claim":"Q1c photon energy at 525nm and per-mole energy in kJ/mol",
   "code":"h=6.626e-34;c=2.998e8;NA=6.022e23;E=h*c/(525e-9);Em=E*NA/1000; result=(abs(E-3.784e-19)<5e-22) and (abs(Em-228)<2)"},
  {"claim":"Q1d absorbance of mixture = 0.50",
   "code":"A=(0.80*2.00+0.30*3.00)/(2.00+3.00); result=abs(A-0.50)<1e-9"},
  {"claim":"Q2a C4H8O2 mass approx 88 and DoU=1",
   "code":"M=4*12+8*1.008+2*15.995; dou=(2*4+2-8)/2; result=(abs(M-88)<0.2) and (dou==1)"},
  {"claim":"Q3c resolution=1.80 and baseline",
   "code":"Rs=2*(6.8-5.0)/(0.9+1.1); verdict='baseline' if Rs>=1.5 else 'overlap'; result=(abs(Rs-1.80)<1e-9) and (verdict=='baseline')"},
  {"claim":"Q3b Rf values 0.75 and 0.30",
   "code":"result=(abs(6.0/8.0-0.75)<1e-9) and (abs(2.4/8.0-0.30)<1e-9)"}
]